title: "A Stride-based Sequence Aligner with Boundary-Aware Multi-Seed Traceback for Genomic DNA Sequence Analysis"
authors: "Donghui Lee, Inuk Jung, and Yongtae Kim"
conference: "ACM/SIGAPP Symposium on Applied Computing (SAC), Mar. 2026"
link: ""
regstatus: n

title: "De novo transcriptome assembly and gene expression analysis of Cnidium offinale under high- temperature conditions"
authors: "Sohee Shin, Eonyong Han, Hyeju Seong, Yong-il Kim, Inuk Jung, Woosuk Jung"
conference: "BMC Genomics 2025"
link: "https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-025-12051-5"
regstatus: n

title: "Identification of Severity Related Mutation Hotspots in SARS-CoV-2 Using a Density-Based Clustering Approach"
authors: "Sohyun Youn, Dabin Jeong, Hwijun Kwon, Eonyong Han, Sun Kim and Inuk Jung"
conference: "BMC BioData Mining 2025"
link: "https://doi.org/10.1186/s13040-025-00476-3"
regstatus: y

title: "SynchDP: A Correlation Based Sequence Alignment Algorithm for Synchronizing Longitudinal Clinical Data"
authors: "Seokhwan Seong, Seunghwan Bae, Jaeyeon Jang, Inuk Jung"
conference: "Computers in Biology and Medicine 2025"
link: "https://doi.org/10.1016/j.compbiomed.2025.110853"
regstatus: y

title: "A review on multi-omics integration for aiding study design of large scale TCGA cancer datasets"
authors: "Eonyong Han, Hwijun Kwon, Inuk Jung"
conference: "BMC Genomics 2025"
link: "https://doi.org/10.1186/s12864-025-11925-y"
regstatus: y

title: "Profiling short-term longitudinal severity progression and associated genes in COVID-19 patients using EHR and single-cell analysis"
authors: "Seung Hwan Bae, Donghee Kim, Jaeyeon Jang, A-Sol Kim, Soyoon Hwang, Eunkyung Nam, Sohyun Bae, Ji Yeon Lee, Ji Sun Kim, Sang Cheol Kim, Hye-Yeong Jo, Kwangsoo Kim, Inuk Jung & Ki Tae Kwon 
conference: "Scientific Reports 2025"
link: "https://doi.org/10.1038/s41598-025-07793-x"
regstatus: y

title: "Dihydrotestosterone-androgen receptor signaling suppresses EBV-positive gastric cancer through DNA demethylation-mediated viral reactivation"
authors: "Miyeon Cho, Hyeji Byun, Sun Hee Lee, Sohyun Youn, Inuk Jung, Joohee Jung, Junho Lee, Hyosun Cho & Hyojeung Kang"
conference: "Gastric Cancer 2025"
link: "https://link.springer.com/article/10.1007/s10120-025-01626-6"
regstatus: y

title: "Identifying AC control patterns from a massive longitudinal log dataset using deep clustering"
authors: "Seunghwan Bae, Donghee Kim, Seokhwan Seong, Jaeyeon Jang, Youngkyoon Suh, Honghyun Kim, Dongwoo Han and Inuk Jung"
conference: "IEEE Access 2025"
link: "https://ieeexplore.ieee.org/document/10942373"
regstatus: y

title: "EpicPred: Predicting phenotypes driven by epitope binding TCRs using attention-based multiple instance learning"
authors: "Jaemin Jeon, Suwan Yu, Sangam Lee, Sang Cheol Kim, Hye-Yeong Jo, Inuk Jung, Kwangsoo Kim" 
conference: "Bioinformatics 2025"
link: "https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaf080/8029663"
regstatus: y

title: "ExPDrug: Integration of an interpretable neural network and knowledge graph for pathway-based drug repurposing"
authors: "Junku Kim, Hojoong Jang, Youngjun Park, Inuk Jung, Kyuri Jo"
conference: "Computers in Biology and Medicine 2025"
link: "https://www.sciencedirect.com/science/article/abs/pii/S0010482525000794"
regstatus: y

title: "LOCOS: A cosine based local gene expression pattern finding algorithm on time-series data"
authors: "Youjeong Suk, Jaemin Jeon, and Inuk Jung"
conference: "2024 IEEE International Conference on Big Data"
link: "https://www.computer.org/csdl/proceedings-article/bigdata/2024/10825504/23yky7C9gkM"
regstatus: y

title: "Disease progression associated cytokines in COVID-19 patients with deteriorating and recovering health conditions"
authors: "Eonyong Han, Sohyun Youn, Ki Tae Kwon, Sang Cheol Kim, Hye-Yeong Jo and Inuk Jung"
conference: "Scientific Reports 2024"
link: "https://www.nature.com/articles/s41598-024-75924-x"
regstatus: y

title: "Dihydrotestosterone Enhances MICA-Mediated Immune Responses to Epstein–Barr Virus-Associated Gastric Carcinoma"
authors: "Donghyun Seo, Hyeji Byun, Miyeon Cho, Sun Hee Lee, Sohyun Youn,Junho Lee, Inuk Jung, Hyosun Cho, and Hyojeung Kang"
conference: "Cancers 2024"
link: "https://www.mdpi.com/2072-6694/16/18/3219"
regstatus: y

title: "Denoiseit: denoising gene expression data using rank based isolation trees"
authors: "Jaemin Jeon, Youjeong Suk, Sang Cheol Kim, Hye-Yeong Jo, Kwangsoo Kim and Inuk Jung"
conference: "BMC Bioinformatics 2024"
link: "https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-024-05899-z"
regstatus: y

title: "Analyzing The Readability of Korean Serif and Sans Serif Fonts Using Eye-tracking Data"
authors: "옥준영, 이석재, 정인욱"
conference: "정보과학회 컴퓨팅의 실제 논문지 2024"
link: "https://doi.org/10.5626/KTCP.2024.30.6.264"

title: "Analyzing Korean Font Readability Using Eye Tracking Data: Focusing on Saccade Main Sequence"
authors: "옥준영, 이석재, 정인욱"
conference: "Journal of Digital Contents Society (JDCS) 2024"
link: "https://doi.org/10.9728/dcs.2024.25.1.239"

title: "Exosome from IFN-γ-primed induced pluripotent stem cell-derived mesenchymal stem cells improved skin inflammation and barrier function"
authors: "Jin Yoon, Seul Ki Lee, Arum Park, Jiho Lee, Inuk Jung, Kun Baek Song, Eom Ji Choi, Soo Kim, Jinho Yu"
conference: "International Journal of Molecular Sciences 2023"
link: "https://doi.org/10.3390/ijms241411635"

title: "MOPA: An Integrative Multi-Omics Pathway Analysis Method for Measuring Omics Activity"
authors: "Jaemin Jeon, Eon Yong Han and Inuk Jung"
conference: "PLOS ONE 2023"
link: "https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0278272"

title: "Characterization of a new CCCTC-binding factor binding site as a dual regulator of Epstein-Barr virus latent infection"
authors: "Sun Hee Lee, Kyoung-Dong Kim, Miyeon Cho, Subin Cho, Sora Huh, Hideki Tanizawa, Inuk Jung, Hyosun Cho, and Hyojeung Kang"
conference: "PLOS Pathogens 2022"
link: "https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011078"

title: "Measuring single-cell level gene expression stability and variability in healthy and severe COVID-19 patients using Kullback–Leibler divergence (Poster)"
authors: "Inseung Hwang, Jaeyeon Jang, Kwangsoo Kim, Hye-Yeong Jo, Sang Cheol Kim, Inuk Jung"
conference: "IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2022"
link: "https://ieeexplore.ieee.org/document/9995123"

title: "A Time-Course Multi-Clustering Method for Single-Cell Trajectory Inference"
authors: "Jaeyeon Jang, Inuk Jung"
conference: "KIISE 2022"
link: "https://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002887221"

title: "A Survey on Computational Methods for Investigation on ncRNA-Disease Association through the Mode of Action Perspective"
authors: "Dongmin Bang, Jeonghyeon Gu, Joonhyeong Park,Dabin Jeong, Bonil Koo, Jungseob Yi, Jihye Shin, Inuk Jung, Sun Kim and Sunho Lee"
conference: "International Journal of Molecular Sciences 2022"
link: "https://www.mdpi.com/1422-0067/23/19/11498"

title: "A Network Topology Scaling Method for Improving Network Comparison Using Colon Cancer Transcriptome Data"
authors: "Eonyong Han, Inuk Jung"
conference: "KIISE 2022"
link: "https://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002866005"

title: "COVID-19 Virus Whole-genome Embedding Strategy through Density-based Clustering and Deep Learning Model"
authors: "Minwoo Pak, Sangseon Lee, Inyoung Sung, Yunyol Shin, Inuk Jung, Sun Kim"
conference: "KIISE 2022"
link: "https://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002831220"

title: "IDEA: Integrating Divisive and Ensemble-Agglomerate hierarchical clustering framework for arbitrary shape data"
authors: "Hongryul Ahn, Inuk Jung, Heejoon Chae, Minsik Oh, Inyoung Kim, Sun Kim"
conference: "IEEE International Conference on Big Data (Big Data) 2021"
link: "https://ieeexplore.ieee.org/document/9671953"

title: "TimesVector-Web: A Web Service for Analysing Time Course Transcriptome Data with Multiple Conditions"
authors: "Jaeyeon Jang, Inseung Hwang and Inuk Jung"
conference: "Genes 2021"
link: "https://doi.org/10.3390/genes13010073"

title: "MONTI: A Multi-Omics Non-negative Tensor Decomposition Framework for Gene-Level Integrative Analysis"
authors: "Inuk Jung, Minsu Kim, Sungmin Rhee, Sangsoo Lim and Sun Kim"
conference: "Frontiers in Genetics, 10 September 2021"
link: "https://doi.org/10.3389/fgene.2021.682841"

title: "K-mer Based RNA-seq Read Distribution Method For Accelerating De Novo Transcriptome Assembly"
authors: "Hwijun Kwon, Inuk Jung"
conference: "KIISE 2020"
link: "https://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002615754"

title: "DRIM: A Web-Based System for Investigating Drug Response at the Molecular Level by Condition-Specific Multi-Omics Data Integration"
authors: "Minsik Oh, Sungjoon Park, Sangseon Lee, Dohoon Lee, Sangsoo Lim, Dabin Jeong, Kyuri Jo, Inuk Jung and Sun Kim"
conference: "Frontiers in Genetics, 12 November 2020"
link: "https://doi.org/10.3389/fgene.2020.564792"

title: "Development of genetic quality tests for good manufacturing practice-compliant induced pluripotent stem cells and their derivatives"
authors: "Hye-Yeong Jo, Hyo-Won Han, Inuk Jung, Ji Hyeon Ju, Soon-Jung Park, Sunghwan Moon, Dongho Geum, Hyemin Kim, Han-Jin Park, Sun Kim, Glyn N Stacey, Soo Kyung Koo, Mi-Hyun Park, Jung-Hyun Kim"
conference: "Nature Scientific Reports, 10(1), 2020"
link: "https://doi.org/10.1038/s41598-020-60466-9"

title: "A non-negative matrix factorization based framework for the analysis of multi-class time-series single-cell RNA-seq data"
authors: "Inuk Jung, Joungmin Choi and Heejoon Chae"
conference: "IEEE Access, Volume 8, 2020"
link: "https://ieeexplore.ieee.org/abstract/document/9018223"

title: "HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis"
authors: "Hongryul Ahn, Inuk Jung, Heejoon Chae, Dongwon Kang, Woosuk Jung and Sun Kim "
conference: "BMC Bioinformatics volume 20, Article number: 588 (2019)"
link: "https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3072-2"

title: "Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data"
authors: "Sangsoo Lim, Sangseon Lee, Inuk Jung, Sungmin Rhee, Sun Kim"
conference: "Briefings in Bioinformatics 2018, bby097, https://doi.org/10.1093/bib/bby097"
link: "https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bby097/5181542"

title: "The mRNA and miRNA transcriptomic landscape of Panax Ginseng under the high ambient temperature"
authors: "Inuk Jung, Hyejin Kang, Jan Uk Kim, Hyeonsook Chang, Sun Kim and Woosuk Jung"
conference: "BMC Systems Biology, 12(Suppl 2):27, 2018"
link: "https://bmcsystbiol.biomedcentral.com/articles/10.1186/s12918-018-0548-z"

title: "TimesVector: a vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes."
authors: "Inuk Jung, Kyuri Jo, Hyejin Kang, Hongryul Ahn, Youngjae Yu, Sun Kim"
conference: "Bioinformatics, 33(23), 2017"
link: "https://academic.oup.com/bioinformatics/article/33/23/3827/2918135"
website: "http://epigenomics.snu.ac.kr/TimesVector/"

# - title: "Clustering methods and approaches for the integrated analysis of protein coding and non-coding transcripts"
#   authors: "Inuk Jung"
#   conference: "Ph.D. Thesis, 2017"

title: "Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice"
authors: "Inuk Jung, Hongryul Ahn, Seon-Ju Shin, Jukon Kim, Hawk-Bin Kwon, Woosuk Jung and Sun Kim"
conference: "BMC Systems Biology, 10(Suppl 4):115, 2016"
link: "https://bmcsystbiol.biomedcentral.com/articles/10.1186/s12918-016-0355-3"

title: "Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice"
authors: "Hongryul Ahn, Inuk Jung, Seon-Ju Shin, Jinwoo Park, Sungmin Rhee, Ju-Kon Kim, Woosuk Jung, Hawk-Bin Kwon, Sun Kim"
conference: "Frontiers in Plant Science, 8:1044, 2016"
link: "https://www.frontiersin.org/articles/10.3389/fpls.2017.01044/full"

title: "Novel drought-responsive regulatory coding and non-coding transcripts from Oryza Sativa L."
authors: "Seon-Ju Shin, Hongryul Ahn, Inuk Jung, Sungmin Rhee, Sun Kim, Hawk-Bin Kwon"
conference: "Genes & Genomics, 38(10), 2016"
link: "https://link.springer.com/article/10.1007/s13258-016-0439-x"

title: "Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways"
authors: "Kyuri Jo, Inuk Jung, Ji Hwan Moon and Sun Kim"
conference: "Bioinformatics, 32(12), 2016"
link: "https://academic.oup.com/bioinformatics/article/32/12/i128/2288870"

title: "Spherical vector clustering 기법과 Support Vector Machine을 이용한 한발관련 표현형이 다른 벼의 복수 시계열 Next Generation Sequencing 테이터의 분석"
authors: "강혜진, 정인욱, 정우석, 김선"
conference: "한국정보과학회 2015년 동계학술발표회 논문집, 2015(12), 2015"
link: "http://www.dbpia.co.kr/Journal/ArticleDetail/NODE06602482?TotalCount=0&Seq=9&isIdentifyAuthor=1&Collection=0&isFullText=0&specificParam=0&SearchMethod=0&Page=1&PageSize=20"

title: "piClust: A density based piRNA clustering algorithm"
authors: "Inuk Jung, Jong Chan Park and Sun Kim"
conference: "Computational Biology and Chemistry, 50, 2014"
link: "https://www.sciencedirect.com/science/article/pii/S1476927114000103?via%3Dihub"
website: "http://epigenomics.snu.ac.kr/piclustweb/"

title: "BioVLAB - Cloud-based Bioinformatics Analysis Workbench"
authors: "서석준, 오민식, 정인욱, 채희준, 김선"
conference: "한국정보과학회, 정보과학회논문지, 31(3), 2013"
link: "http://www.dbpia.co.kr/Journal/ArticleDetail/NODE02112438?TotalCount=941&Seq=13&q=(%5B%EC%83%9D%EB%AC%BC%20%EC%A0%95%EB%B3%B4%20%3B%20%C2%A7coldb%C2%A72%C2%A751%C2%A73%5D)&searchWord=%EC%A0%84%EC%B2%B4%3D%5E%24%EC%83%9D%EB%AC%BC%20%EC%A0%95%EB%B3%B4%20%3B%20%5E*&searchWordCondition=%EC%9E%90%EB%A3%8C%EC%9C%A0%ED%98%95%3D%5E%24%EC%A0%84%EC%B2%B4%5E*&Multimedia=0&isIdentifyAuthor=0&Collection=0&isFullText=0&specificParam=0&SearchMethod=2&SearchOper=System.Int32%5B%5D&SearchKeyword=System.String%5B%5D&SearchOption=System.Int32%5B%5D&Category=002008&PublishDate=11&Sort=1&SortType=desc&Page=1&PageSize=20"

title: "Bio and health informatics meets cloud : BioVLab as an example"
authors: "Heejoon Chae, Inuk Jung, Hyungro Lee, Suresh Marru, Seong-Whan Lee and Sun Kim"
conference: "Health Information Science and Systems, 1:6, 2013"
link: "https://link.springer.com/article/10.1186%2F2047-2501-1-6"

title: "Advanced handover schemes in IMT-advanced systems"
authors: "Ronny Yongho Kim, Inuk Jung, Xiangying Yang, Chao-Chin Chou"
conference: "IEEE COMMUNICATIONS MAGAZINE, 48:8, 2010"
link: "https://ieeexplore.ieee.org/document/5534590"

title: "An Improved Cross-Layering Design for IPv6 Fast Handover with IEEE 802.16m Entry Before Break Handover"
authors: "Ronny Yongho Kim, Inuk Jung, Young Yong Kim"
conference: "IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E93A:8, 2010"
link: "https://www.jstage.jst.go.jp/article/transfun/E93.A/8/E93.A_8_1524/_article"

title: "RETOS: Resilient, Expandable, and Threaded Operating System for Wireless Sensor Networks"
authors: "Hojung Cha, Sukwon Choi, Inuk Jung, Hyoseung Kim, Hyojeong Shin, Jaehyun Yoo, Chanmin Yoon"
conference: "6th International Symposium on Information Processing in Sensor Networks (IPSN), 2007"
link: "https://ieeexplore.ieee.org/document/4379674"

title: "RMTool: Component-Based Network Management System for Wireless Sensor Networks"
authors: "Inuk Jung, Hojung Cha"
conference: "4th IEEE Consumer Communications and Networking Conference (CCNC), 2007"
link: "https://ieeexplore.ieee.org/document/4199214"

# - title: "RMon: A Proactive Sensor Network Management Framework for the RETOS Applications"
#   authors: "Inuk Jung"
#   conference: "MSc Thesis, 2007"

title: "GUI 기반의 센서 네트워크 관리 도구"
authors: "Inuk Jung, Hojung Cha"
conference: "한국정보과학회 2006 가을 학술발표논문집, 33:2(B), 2006"
link: "http://www.dbpia.co.kr/Journal/ArticleDetail/NODE00768479#"